1107-tadaA-6166-sf-all-mis-pli
12library(tadaA)setwd("/storage11_7T/fuy/TADA-A")
1234567TADA_A_adjust_mutrate(window_file = 'db/MS_data/windows_partition/cd_windows ...
1107-tadaA-6166-sf
12library(tadaA)setwd("/storage11_7T/fuy/TADA-A")
1234567TADA_A_adjust_mutrate(window_file = 'db/MS_data/windows_partition/cd_windows ...
1105-tadaA-simulate-rr0-uniform-scale-6166
12345setwd("/storage11_7T/fuy/TADA-A/TADA-A/lib")library(data.table)library(doParallel)library(foreach)library(data.table)
123456# f = fre ...
1104-tadaA-simulate-6430-rr036
12345setwd("/storage11_7T/fuy/TADA-A/TADA-A/lib")library(data.table)library(doParallel)library(foreach)library(data.table)
Loading required ...
201023-tadaA-res-allinfo
missense, LoF, PTM, etc.
https://yfu1116.github.io/project/0907_tadaA_res_modify/
DeepSEA PTM
https://yfu1116.github.io/project/201012-DeepSEA-overal ...
0907_tadaA_res_modify
all separate estimation1234567setwd("/storage11_7T/fuy/TADA-A/annotation")a = readRDS(paste0("/storage11_7T/fuy/TADA-A/annotation/2020- ...
201019-tadaA-wes-interaction-res
separate estimation1rr
A data.frame: 15 × 4
log_RRlower_boundupper_boundannota
<dbl><dbl><dbl><chr>
2.598719 ...
201016-tadaA-all-annota
12library(tadaA)setwd("/storage11_7T/fuy/TADA-A/db/MS_data")
12345678910111213141516171819202122232425262728293031323334353637383940414243 ...
201012-DeepSEA-overall-res
DeepSEA (estimated separately)1b
A data.frame: 19 × 4
logRRlower_boundupper_boundannota
<dbl><dbl><dbl><chr>
...
0915_paper-tadaA_annota_rr_compare
gnomad.v2.1.1.all_lofs
RR=2.2615612
[1.6800949, 2.8430276]
PTVs in paper
RR(average by genes) = 1.949428
MPC_gt2
RR=2.0834977
[1.8200768,1. ...
