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12library(tadaA)setwd("/storage11_7T/fuy/TADA-A") 1234567TADA_A_adjust_mutrate(window_file = 'db/MS_data/windows_partition/cd_windows ...

12library(tadaA)setwd("/storage11_7T/fuy/TADA-A") 1234567TADA_A_adjust_mutrate(window_file = 'db/MS_data/windows_partition/cd_windows ...

12345setwd("/storage11_7T/fuy/TADA-A/TADA-A/lib")library(data.table)library(doParallel)library(foreach)library(data.table) 123456# f = fre ...

12345setwd("/storage11_7T/fuy/TADA-A/TADA-A/lib")library(data.table)library(doParallel)library(foreach)library(data.table) Loading required ...

missense, LoF, PTM, etc. https://yfu1116.github.io/project/0907_tadaA_res_modify/ DeepSEA PTM https://yfu1116.github.io/project/201012-DeepSEA-overal ...

all separate estimation1234567setwd("/storage11_7T/fuy/TADA-A/annotation")a = readRDS(paste0("/storage11_7T/fuy/TADA-A/annotation/2020- ...

separate estimation1rr A data.frame: 15 × 4 log_RRlower_boundupper_boundannota <dbl><dbl><dbl><chr> 2.598719 ...

12library(tadaA)setwd("/storage11_7T/fuy/TADA-A/db/MS_data") 12345678910111213141516171819202122232425262728293031323334353637383940414243 ...

DeepSEA (estimated separately)1b A data.frame: 19 × 4 logRRlower_boundupper_boundannota <dbl><dbl><dbl><chr> ...

gnomad.v2.1.1.all_lofs RR=2.2615612 [1.6800949, 2.8430276] PTVs in paper RR(average by genes) = 1.949428 MPC_gt2 RR=2.0834977 [1.8200768,1. ...