1119-12166DNM-sf-6430-fam
6166 DNM
7131 DNM in coding windows
ALT should be SNV while REF could be whatever.
duplicated
list the de novo variants called in the 6,430 individu ...
201117-tadaA-report
Overview of datasets1df3
A data.frame: 8 × 11
Grouporg_countorg_percentfiltered_countfiltered_percentannovar_obsannovar_obs_percentbg_af_calib ...
201113-6166DNM-4059fam-sf-1441_d_1068-ccr-pli-splidex-mis
6166 DNM
7131 DNM in coding windows
ALT should be SNV while REF could be whatever.
duplicated
1234f = fread("/storage11_7T/fuy/TADA-A/cell_WES/ ...
1107-tadaA-6166-1465_d_1692-new-MPC-gt2
12library(tadaA)setwd("/storage11_7T/fuy/TADA-A")
1234567TADA_A_adjust_mutrate(window_file = 'db/MS_data/windows_partition/cd_windows ...
1107-tadaA-6166-1465_d_1692-all-mis-pli
12library(tadaA)setwd("/storage11_7T/fuy/TADA-A")
1234567TADA_A_adjust_mutrate(window_file = 'db/MS_data/windows_partition/cd_windows ...
1107-tadaA-6166-1441-d-1692
12library(tadaA)setwd("/storage11_7T/fuy/TADA-A")
1234567TADA_A_adjust_mutrate(window_file = 'db/MS_data/windows_partition/cd_windows ...
1028-tadaA-7131-x0.36
12library(tadaA)setwd("/storage11_7T/fuy/TADA-A")
1234567TADA_A_adjust_mutrate(window_file = 'db/MS_data/windows_partition/cd_windows ...
201028-tadaA-res
dataset7131 autosomal protein-coding denovo mutations in case, including missense(MPC>=0), PTV(pLI >= 0) and synonymous.
mis(MPC >= 1) + PTV ...
1105-tadaA-simulate-rr0-uniform-scale-6166 (1)
12345setwd("/storage11_7T/fuy/TADA-A/TADA-A/lib")library(data.table)library(doParallel)library(foreach)library(data.table)
123456# f = fre ...
1107-tadaA-6166
12library(tadaA)setwd("/storage11_7T/fuy/TADA-A")
1234567TADA_A_adjust_mutrate(window_file = 'db/MS_data/windows_partition/cd_windows ...